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#ISEPpapers 23: January, February, and March 2024

Your twenty-third digest of papers and preprints published by members of the International Society for Evolutionary Protistology is here. Do you like your #ISEPpapers as fresh as possible? Follow us on Mastodon or Twitter. You can also join our Facebook group. Enjoy!



Meteora sporadica, a protist with incredible cell architecture, is related to Hemimastigophora. Yana Eglit, Takashi Shiratori, Jon Jerlström-Hultqvist, Kelsey Williamson, Andrew J. Roger, Ken-Ichiro Ishida. Read.











Eukfinder: a pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data. Dandan Zhao, Dayana E. Salas-Leiva, Shelby K. Williams, Katherine A. Dunn, Andrew J. Roger. Read.









Shaping up genomes: Prokaryotic roots and eukaryotic diversification of SMC complexes. Jolien J. E. van Hooff, Maximilian W. D. Raas, Eelco C. Tromer, Laura Eme. Read.






Lighting lantern above Psalteriomonadidae: Unveiling novel diversity within the genus Psalteriomonas (Discoba: Heterolobosea). Martina Foučková, Kristýna Uhrová, Aneta Kubánková, Tomáš Pánek, Ivan Čepička. Read.






Encyclopedia of Family A DNA Polymerases Localized in Organelles: Evolutionary Contribution of Bacteria Including the Proto-Mitochondrion. Ryo Harada, Yoshihisa Hirakawa, Akinori Yabuki, Eunsoo Kim, et al. Read.








Phytoplankton ecology in the early years of a boreal oil sands end pit lake. Chantel C. Furgason, Angela V. Smirnova, Joel B. Dacks & Peter F. Dunfield. Read.












Phylogenomic, structural, and cell biological analyses reveal that Stenotrophomonas maltophilia replicates in acidified Rab7A-positive vacuoles of Acanthamoeba castellanii. Javier Rivera, Julio C. Valerdi-Negreros, Diana M. Vázquez-Enciso, Fulvia-Stefany Argueta-Zepeda, Pablo Vinuesa. Read.




Phylogenomic position of eupelagonemids, abundant, and diverse deep-ocean heterotrophs. Gordon Lax, Noriko Okamoto, Patrick J Keeling. Read.











Exploring the prokaryote-eukaryote interplay in microbial mats from an Andean athalassohaline wetland. Carolina F. Cubillos, Pablo Aguilar, David Moreira, Paola Bertolino, Miguel Iniesto, Cristina Dorador, Purificación López-García. Read.









Gazing into the abyss: A glimpse into the diversity, distribution, and behaviour of heterotrophic protists from the deep-sea floor. Lawrence Rudy Cadena, Virginia Edgcomb, Julius Lukeš. Read.







In silico prediction of the metabolism of Blastocrithidia nonstop, a trypanosomatid with non-canonical genetic code. Fred R. Opperdoes, Kristína Záhonová, Ingrid Škodová-Sveráková, Barbora Bučková, Ľubomíra Chmelová, Julius Lukeš, and Vyacheslav Yurchenko. Read.




Microbial eukaryotic predation pressure and biomass at deep-sea hydrothermal vents. Sarah K Hu, Rika E Anderson, Maria G Pachiadaki, Virginia P Edgcomb, et al. Read.








Nucleomorph phylogenomics suggests a deep and ancient origin of cryptophyte plastids within Rhodophyta. Lukas V. F. Novak, Sergio A. Muñoz-Gómez, Fabian van Beveren, Maria Ciobanu, Laura Eme, Purificación López-García, David Moreira. Read.




Characterisation of Skoliomonas gen. nov., a haloalkaliphilic anaerobe related to barthelonids (Metamonada). Yana Eglit, Shelby K. Williams, Andrew J. Roger, Alastair G.B. Simpson. Read.










New plastids, old proteins: repeated endosymbiotic acquisitions in kareniacean dinoflagellates. Anna MG Novák Vanclová, Charlotte Nef, Zoltán Füssy, Adél Vancl, Fuhai Liu, Chris Bowler, and Richard G Dorrell. Read.







Comprehensive analysis of the microbial consortium in the culture of flagellate Monocercomonoides exilis. Alejandro Jiménez-González, Sebastian Cristian Treitli, Priscila Peña-Diaz, Anna Janovská, Vladimír Beneš, Petr Žáček, Vladimír Hampl. Read.





Divergent marine anaerobic ciliates harbor closely related Methanocorpusculum endosymbionts. Anna Schrecengost, Johana Rotterová, Kateřina Poláková, Ivan Čepička, Roxanne Beinart. Read.















Biotic interactions explain seasonal dynamics of the alpine soil microbiome. Anna Maria Fiore-Donno, Jule Freudenthal, Mathilde Borg Dahl, Christian Rixen, Tim Urich, Michael Bonkowski. Read.







Complex Endosymbioses I: From Primary to Complex Plastids, Serial Endosymbiotic Events. Zoltán Füssy & Miroslav Oborník. Read.










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